Entering edit mode
2.4 years ago
Nelo
▴
20
Hello
Is there any way to get protein sequences from given locus, for e.g.,
Gene name locus
PvPIP2;4 Phvul.005G135300
PvTIP1;3 Phvul.008G014900
PvTIP2;2 Phvul.010G147100
PvNIP1;4 Phvul.002G242300
PvSIP1;1 Phvul.001G097000
Or can i convert the locus to protein ID
What organism are these ID's from? Also the source these came from.
ORGN is common bean DOI 10.1007/s00438-015-1038-2
NCBI is not using either of those ID's so if you need to keep them in context then NCBI's genome entry will not help.
Ensembl plants seems to be using a different variation of that locus name. So your best bet is to go to the source where those ID's came from.