Operon Predict on novel bacterial isolates
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6 weeks ago
mdvs • 0

I would like to predict operons or transcription units on a newly assembled genome. Currently the strain have been assembled and annotated, RNAseq is also available as well as proteomics evidence.

What would be the best approach to infer transcription units?

The question is if potential genes are being co-expressed as a transcription unit.

rnaseq genomics operon prediction proteomics • 128 views
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Entering edit mode
6 weeks ago

Hello and good morning, afternoon, or evening,

Rockhopper can do this for you, but starting from the raw FASTQ files: https://cs.wellesley.edu/~btjaden/Rockhopper/

Kevin

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