It seems that most differential gene expression packages for RNA-Seq are written in R.
- edgeR - limma - DESeq
Are any similar (and easy to use) packages available for Python, or have any of the R packages been ported?
The best I could find was:
But I really don't want to use rpy2 (_1st link_). The second link is probably where I would start, but I first wanted to make sure I'm not reinventing the wheel.
This question was asked on Stackoverflow (https://stackoverflow.com/questions/36305682/differential-gene-expression-analysis-in-python), but closed because your not allowed to ask for suggestions on tools (please explain all the upvotes then), but in any case, I thought I'd bring it over to this forum for suggestions.