extract uniprot id from pdb header file
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4 weeks ago
devhimd • 0

extract uniprot id from pdb header file

from id extract file pdb header uniprot • 373 views
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what tried ?

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At least post example pdb header file.

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https://files.rcsb.org/view/1AKL.pdb = link for pdb header file

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28 days ago
$ awk '/UNP/ {print $2,$7}' 1AKL.pdb

1AKL Q03023

$ grep -w "UNP" 1AKL.pdb | tr -s " "| cut -f2,7 -d " "
1AKL Q03023
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using python?

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