How to split hashtag fastq?
0
0
Entering edit mode
12 weeks ago
thejustpark ▴ 80

We have hashtag scRNA-Seq data (fastq1, fastq2, HTO-fastq1, and HTO-fastq2) each including 6 samples. We know that there are ways to calculate counts for each UMI for each sample (scRNA-seq CITE-seq-count bioinformatics). However, we would like to split the fastq files by the sample. Could you please let me know if there's a tool or a way to modify existing tools (e.g., CITE-Seq-cnt mentioned above) for that purpose?

Thanks,

single-cell hashtag • 126 views
ADD COMMENT

Login before adding your answer.

Traffic: 2218 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6