How to merge different VCF files
1
0
Entering edit mode
15 months ago
Elisa • 0

Hi everyone,

I have 2 different VCF files (v4.3) : one containing SNP and Indels and the other one containing CNVs. The latter has only the mandatory fields (CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO) while the former has also the field FORMAT and one reference genotype.

How can I merge these 2 VCF files?

Thanks in advance.

VCF • 631 views
ADD COMMENT
0
Entering edit mode

SNP and Indels and the other one containing CNVs.

why would you need to merge those files? what's your aim ?

ADD REPLY
0
Entering edit mode

We would like to annotate the variants on QCI-I. Do you suggest us to launch two separate analysis (so one for the annotation of SNP and Indels VCF file and one for the annotation of CNV VCF file) ?

ADD REPLY

Login before adding your answer.

Traffic: 1290 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6