Question

extract uniprot id from pdb header file

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2.5 years ago

devhimd ▴ 10

extract uniprot id from pdb header file

uniprot pdb • 1.3k views

ADD COMMENT • link updated 13 months ago by Ram 43k • written 2.5 years ago by devhimd ▴ 10

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what tried ?

ADD REPLY • link 2.5 years ago by Pierre Lindenbaum 161k

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At least post example pdb header file.

ADD REPLY • link 2.5 years ago by cpad0112 21k

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ADD REPLY • link 2.5 years ago by devhimd ▴ 10

score 0 · Answer 1 · 2021-10-30

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2.5 years ago

cpad0112 21k

$ awk '/UNP/ {print $2,$7}' 1AKL.pdb

1AKL Q03023

$ grep -w "UNP" 1AKL.pdb | tr -s " "| cut -f2,7 -d " "
1AKL Q03023

ADD COMMENT • link 2.5 years ago by cpad0112 21k

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using python?

ADD REPLY • link 2.5 years ago by devhimd ▴ 10