Getting genetic code variation of organisms through CLI
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2.5 years ago

NCBI has an option to browse the taxonomic tree and get the genetic code/translation tables of organisms by txid (found by clicking the button labelled 'Genetic Code in Taxonomy Tree'): https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi

Is there a way to do this in Entrez, or any other command-line tool / coding package?

taxonomy NCBI entrez genetic-code • 643 views
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The translations tables can be accessed using Biopython utils.

https://biopython.org/DIST/docs/tutorial/Tutorial.html#sec26

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Where is the option here to provide Biopython with a taxonomic id and get the corresponding translation table?

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