I have a serious question,
I have a gvcf and I need to reconstruct the haplotype of the sample. How can I Annotate my gvcf? Through which software?
The haplosaurus package which is part of the VEP, does this.
Sorry, but I can't find it, would you give me the link?
And does this package need to be installed on a linux/Unix (Ubuntu) system?
The VEP can be installed on all different kinds of systems and there are different ways to do this. Full installation instructions here
Does the link in my post not work?
Yes, it doesn't work.
fixed it now
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