gVCF Annotation
1
0
Entering edit mode
9 months ago
GiV17 ▴ 40

Hi, I have a serious question, I have a gvcf and I need to reconstruct the haplotype of the sample. How can I Annotate my gvcf? Through which software? Thanks

gvcf Annotation Variant • 563 views
ADD COMMENT
0
Entering edit mode
9 months ago
Emily 23k

The haplosaurus package which is part of the VEP, does this.

ADD COMMENT
0
Entering edit mode

Sorry, but I can't find it, would you give me the link?

ADD REPLY
0
Entering edit mode

And does this package need to be installed on a linux/Unix (Ubuntu) system?

ADD REPLY
0
Entering edit mode

The VEP can be installed on all different kinds of systems and there are different ways to do this. Full installation instructions here

ADD REPLY
0
Entering edit mode

Does the link in my post not work?

ADD REPLY
0
Entering edit mode

Yes, it doesn't work.

ADD REPLY
0
Entering edit mode

fixed it now

ADD REPLY

Login before adding your answer.

Traffic: 922 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6