How to get coordinate of genomic elements?
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8 weeks ago
Ankit ▴ 320

Hi everyone,

I need coordinate of following genomic elements in hg38 version.

  1. Promoter
  2. Enhancers
  3. Exon
  4. Intron
  5. 5'UTR
  6. 3'UTR
  7. Intergenic
  8. CDS
  9. LINEs
  10. SINEs
  11. LTRs
  12. N and S shores
  13. N and S shelves
  14. CpG island
  15. Transposons

If anyone can provide leads for even some of the features, please give your suggestions.

Thanks

Repeats Promoter enhancer CpG • 226 views
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I used this package annotatr for genomic features:

For repeats, I obtained list from SQL table

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