BINGO Cytoscape
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8 weeks ago

How do you interpret GO enrichment results from BINGO plugin in Cytoscape? There are many repetitive GO terms and simple terms e.g. Biological Process. Is there a way to reduce these repetitive terms? I am new to BINGO and GO analysis so any guidance will be really helpful. Thank you!

Cytoscape BINGO SNP enrichment GO • 317 views
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not sure for the BiNGO approach but perhaps you can go with GOslim annotations? Those should be less 'redundant'

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Thank you so much.

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6 weeks ago
scooter ▴ 490

Greetings,

I would recommend using stringApp rather than BiNGO if you want to remove redundant terms. stringApp has a feature that allows you to filter the ontologies used and to remove the redundant terms (using Jaccard similarity).

-- scooter

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Thank you so much. I tried String and ClueGO and it helped me a lot.

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