Mutation annotation on tumor phylogenetic trees

Question

[ceruleanivy]

I have binary matrices with mutation presence absence for every patient where the first column contains an identifier for the mutation. So far, I have produced several phylogenetic trees with phangorn, however, the option of depicting common and private mutations above each branch is not available. Does anybody know any kind of software that will allow me to automatically load annotations for every mutation ?

[Nickier]

Hi! Could you share how to produce phylogenetic trees with phangorn?