Hi everyone, I recently received a Chip seq dataset to analyze. A cell line has been under a treatment and the antibody they used was H3k9me3 and H3k27me3, I already called the peaks and annotated them, but I don't know how should I answer their main question of:
How the global level of histone markers are changed by treatment.
Is there any specific region I should visualize? How about for showing the genome wide changes?
I tried to find stuff out there to help me out, but was not successful.