No block substitutions in plink BIM file?
Entering edit mode
12 months ago
BioStar123 • 0

The BIM file from PLINK contains the variant information that accompanies a BED file. The variants called are based on exome sequencing. However, I encounter a strange issue. The BIM file consists of only single nucleotide substitutions, insertions, and deletions of base pairs. There are 0 multiple base pair substitutions. (block substitutions)

Is this normal?

I copied a few lines from one of the BIM files. (variant 1 is ALT, and 2 is REF)

11  11:75423892:G:C 0   75423892    C   G
11  11:75423898:I:1 0   75423898    CA  C
11  11:75423899:D:3 0   75423899    A   AGTG
11  11:75423899:A:G 0   75423899    G   A
11  11:75423912:C:G 0   75423912    G   C
plink bim • 319 views

Login before adding your answer.

Traffic: 1728 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6