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2.4 years ago
BioStar123
•
0
The BIM file from PLINK contains the variant information that accompanies a BED file. The variants called are based on exome sequencing. However, I encounter a strange issue. The BIM file consists of only single nucleotide substitutions, insertions, and deletions of base pairs. There are 0 multiple base pair substitutions. (block substitutions)
Is this normal?
I copied a few lines from one of the BIM files. (variant 1 is ALT, and 2 is REF)
11 11:75423892:G:C 0 75423892 C G
11 11:75423898:I:1 0 75423898 CA C
11 11:75423899:D:3 0 75423899 A AGTG
11 11:75423899:A:G 0 75423899 G A
11 11:75423912:C:G 0 75423912 G C
