Deleted:bowtie No alignments
0
0
Entering edit mode
5 months ago
wschen97 • 0

hi all, I am working on miRNA alignment using bowtie. But it seems to fail to map. Here are the commands:

bowtie-build -f miRNA.fa miRNA
bowtie --norc -k 1 -v 0 /public/home/wschen_gibh/cpa-seq/ref/miRNA/miRNA -1 SRR16643593_1.NEW.trim.fq -2 SRR16643593_2.NEW.trim.fq -S test.sam 

and here is the result: result

and the output sam file: sam file

Could anyone help? thanks a lot!

bowtie • 541 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 2050 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6