Deleted:bowtie No alignments
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7 weeks ago
wschen97 • 0

hi all, I am working on miRNA alignment using bowtie. But it seems to fail to map. Here are the commands:

bowtie-build -f miRNA.fa miRNA
bowtie --norc -k 1 -v 0 /public/home/wschen_gibh/cpa-seq/ref/miRNA/miRNA -1 SRR16643593_1.NEW.trim.fq -2 SRR16643593_2.NEW.trim.fq -S test.sam 

and here is the result: result

and the output sam file: sam file

Could anyone help? thanks a lot!

bowtie • 380 views
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