help with filtering sequences to make a phylogenetic tree
1
0
Entering edit mode
10 months ago
DJ_MB • 0

Hi everyone

I have a fasta with around 400 sequences, and I have to make a phylogenetic tree, before that I have to eliminate the duplicate sequences, I was thinking of doing it manually with an alignment and a distance matrix but due to the quantity the work is somewhat slow.

Does anyone have any method to do this more quickly?

sequence mega filter fasta • 349 views
ADD COMMENT
0
Entering edit mode
10 months ago
cfos4698 ▴ 510

A quick and dirty way would be to start building an ML tree with iqtree. The program detects identical sequences and outputs a file at the very beginning that only contains unique sequences.

ADD COMMENT

Login before adding your answer.

Traffic: 830 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6