Whole blood cells of human

Question

[zizigolu]

Hello

Seurat team has a data base of human PBMC here

https://app.azimuth.hubmapconsortium.org/app/human-pbmc

We can annotate single cell PBMC against that to immune cell types

But I noticed we can not profile polymorphonuclear leukocytes (PMN) like Neutrophils by PBMC

Do you know any data base for human single cell data but from whole blood cells not PBMC?

Thank you so much in advance

Answer 1

[Friederike]

SingleR with an appropriate reference data set (e.g. from the celldex package)