Tools for sorting samples depending on the barcode
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6 weeks ago
kamanovae ▴ 50

Hi!

Are there tools or scripts for sorting samples based on barcodes. If possible, I would like to arrange samples in different folders.

I will be glad to any advice!

fast barcode • 231 views
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Do you mean tools for demultiplexing?

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It is sorting that interests me. No need to cut off barcodes

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Depending on where your barcode is in the sequence you could use bbduk.sh in filter mode to separate the reads. A guide is available.

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