Entering edit mode
2.4 years ago
langziv
▴
50
Hello.
The input that was submitted to Ensembl-vep's API was in the following format:
12 9067664 9116229 A/C -
12 9067664 9116229 A/G -
12 9067664 9116229 A/T -
The command was
ensembl-vep/vep --database -i /input/variants.txt -o output/output.txt
Which yielded the following errors / warnings:
WARNING: Length of reference allele (A length 1) does not match co-ordinates 9067664-9116229 on line 1
WARNING: Length of reference allele (T length 1) does not match co-ordinates 9067664-9116229 on line 4
WARNING: Length of reference allele (C length 1) does not match co-ordinates 9067664-9116229 on line 10
WARNING: Length of reference allele (G length 1) does not match co-ordinates 9067664-9116229 on line 19
I couldn't figure out what these warnings mean. I used vep before and had no issues with the output. I'd be happy to get some insights.
Thanks.
