Tools for whole genome alignment sequence conservation scoring?
Entering edit mode
7 weeks ago
Jake Warner ▴ 820

Dear Community,
I am curious what tools people are using for multiple whole genome alignments and sequence conservation scoring. I'm looking to compare the conservation of enhancer regions across multiple species similar to this figure. I have looked at using mVista but am turned off that this softawre does not accept MAF files and requires a very specific file format. Could anyone point me to a good workflow, alternative to vista, or tool to make using vista less painful?
Thanks in advance!

genome vista whole WGA synteny alignment • 100 views

Login before adding your answer.

Traffic: 1830 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6