corset -g F,F,F,F,G,G,G,G F1.bam F2.bam F3.bam F4.bam G1.bam G2.bam G3.bam G4.bam
Running Corset Version 1.09 Setting sample groups:F,F,F,F,G,G,G,G, 2 groups in total The number of experimental groups passed (via the -g option) does not match the number of input files. Please check how many values you have passed.
Running Corset Version 1.09
Reading bam file :
0 million alignments read
0.2 million alignments read ....
135 million alignments read
Done reading F1.bam
Segmentation fault (core dumped)
I have tried with and without the -n option, as well as the -r option. With the -n option it gives:
the number of sample names passed (via the -n option), 8, does not match the number of samples, 1. Please check how many values you have passed.
I'm at a loss here, it doesn't seem to recognize the files unless I use a wildcard, and then it only reads the first file and I get a segmentation fault.
Any advice would be appreciated. I didn't find any faults with a memory test.