Corset error reading input files
0
0
Entering edit mode
6 weeks ago
scarey • 0

Input:

corset -g F,F,F,F,G,G,G,G F1.bam F2.bam F3.bam F4.bam G1.bam G2.bam G3.bam G4.bam

Output:

Running Corset Version 1.09 Setting sample groups:F,F,F,F,G,G,G,G, 2 groups in total The number of experimental groups passed (via the -g option) does not match the number of input files. Please check how many values you have passed.

OR

Input:

corset *.bam

Output:

Running Corset Version 1.09
Reading bam file :
F1.bam
0 million alignments read
0.2 million alignments read ....
135 million alignments read
Done reading F1.bam
Segmentation fault (core dumped)

I have tried with and without the -n option, as well as the -r option. With the -n option it gives:

the number of sample names passed (via the -n option), 8, does not match the number of samples, 1. Please check how many values you have passed.

I'm at a loss here, it doesn't seem to recognize the files unless I use a wildcard, and then it only reads the first file and I get a segmentation fault.

Any advice would be appreciated. I didn't find any faults with a memory test.

corset • 114 views
ADD COMMENT
0
Entering edit mode

The directory only contains F1.bam F2.bam F3.bam F4.bam G1.bam G2.bam G3.bam G4.bam

ADD REPLY

Login before adding your answer.

Traffic: 1549 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6