Looking for Synteny blocks database in arthopods
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6 weeks ago
Chvatil ▴ 70

Hello to all the Biostars community.

I am writing this post because I am looking for a database that makes available analyses of synteny already performed between two species of arthopods and available in .gff format for example.

In general, I find a lot of data on ensembl for example but rather access on vertebrate species, and nothing on insect species except for dropohila... While I am looking for synteny between species of Hymenoptera like ants or bees for example.

Does anyone have an idea of such a database?

Thanking you in advance.

database synteny • 200 views
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Possibly https://hymenoptera.elsiklab.missouri.edu/orthologs could be a start....co-linear orthologs could be starting point to compute synteny blocks perhaps

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