How to understand the formula using PCA(Principal component analysis) :patient score = ∑PC1A−∑PC1B?
0
0
Entering edit mode
2.4 years ago
Tommmm • 0

Today I read a paper in Pubmed(doi: 10.1016/j.omtn.2020.08.030), in this paper, they used many methods and finally they got a matrix, and each row represents a gene, each column represents a sample. The genes were split into two groups,called gene set A and gene set B. Then they used the PCA(Principal component analysis) to give each patient a score, and the formula is as followed: patient score = ∑PC1A−∑PC1B, the PC1A represents the first component of gene set A, and PC1B represents the first component of gene set B. So how can I understand this formula, and if I also have a matrix like this, how to get the score using R language?

PCA TCGA R GEO • 485 views
ADD COMMENT

Login before adding your answer.

Traffic: 1866 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6