Hello all,
I would like to test the illumina dragen pipeline on the cloud, but i have a question about the references : For human there are alt-aware or alt-mask and i don't really found precise informations about the difference in term of expected result. I ask the illumina tech support but their answers was really not informative : "Differences between ALT and MASK can be found in internet - this is not something proprietary for illumina.
There is no advise we can give about their usage. This depends on you and we would advise to check the literature for that."
If course if i send a mail it's because i didn't found the answer with Google...
Thanks in advance