Anyone know what the window size ( bin size) for dmrcate is?
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6 weeks ago
simplitia ▴ 70

Hi I'm using the https://bioc.ism.ac.jp/packages/3.3/bioc/vignettes/DMRcate/inst/doc/DMRcate.pdf function to identify regions that are signficantly different; however I can't find in their paper or function vigenette as to how the window size is chosen? For example is there a fix length that gets shifted until the next in.cpgs = X is found? thanks.

EPIC 450K methylation • 155 views
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You may have to look at the lambda argument : https://rdrr.io/bioc/DMRcate/man/dmrcate.html

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