Bash script to help with print Name of reads that only have query subsequence or its verse complement and position of first occurance of this subsequence in read and output of all this in tab separat
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6 weeks ago

Create bash script that receives name of fastq fastq file and query subsequence or its reverse conmplement and the position of first occurrence of this subsequence in read all these are input directed into output file in tabular format For easier interpretation

Please somebody helps it's too difficult

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To be honest, this sounds like a homework exercise...

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I (and likely others) can imagine this is not straightforward for a novice, but nonetheless we would appreciate if you show some effort.

what have you tried already? did you look up what you perhaps could do?

might be harsh to say, but we're not here to do the work for you! We are here to help you when you are stuck or have very specific question on a certain topic/issue

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