vcftools- extract allele frequencies from pooled samples on a sample by sample basis
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7 weeks ago
straderm • 0

I am looking to extract minor allele frequencies using vcftools for pooled samples on a sample by sample basis, as allele frequency output by vcftools is only on a site basis. Further, the reference alleles should be polarized (same ref allele).

poolseq vcftools • 213 views
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Use bcftools +fill-tags, as vcftools is deprecated and should no longer be used.

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