multiBamSummary for unpaired end read?

Question

[adR]

Hello everyone,

I am using multiBamSummary to computes read coverages for many bam files.

 multiBamSummary bins --bamfiles *.bam -out readCounts.npz --outRawCounts readCounts.tab

However, I got errors as below. May I get help please??

[E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes
Traceback (most recent call last):

Thank you! Best ad

[GenoMax]

Looks like you changed the error message that was posted previously. I think the answer given by @Devon still applies.

Answer 1

[Devon Ryan]

One of your BAM files is corrupt.