Macs2 tmp directory
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5 months ago
KH ▴ 70

I am currenting doing some peak calling for ChIP-seq using Macs2, and I'm running into an issue where all the temporary files are being stored in /tmp, but there is not enough space on the root drive to store everything so it throws an error during callpeak once it runs out of space.

Is there a way to set the tmp file location in macs2 to a different location with more space? Or will I have to make room on the root drive? I can't seem to find anything in the documentation for this option.

ChIP-seq macs2 • 297 views
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5 months ago
ATpoint 61k

https://github.com/macs3-project/MACS/issues/148

--tempdir

Should be available in versions version 2.1.1 20160309 and later.

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