Statistics of the regional distribution of transposons on the genome

Question

[82101202089]

I have a problem.

Now I have a GFF3 annotation file for the genome and a transposon annotation file, which is also a GFF3 file.

I want to calculate the distribution of each transposon on the genome, such as the intergene region, promoter region, exon region, and intron region.

But I don't know how to solve this problem. Can someone give me some advice?

[Asaf]

Are you looking for something like bedtools intersect?