I am trying to annotate list of genes with gene start, gene end (build37) and chromosome. I mapped most of the genes from a list downloaded from Biomart/UCSC, but still have 25 genes those are missing from the list. For example PRAG1, CCL4L2 etc etc. I found one link containing these genes
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz but when I tried to map b37 positions of some random genes (e.g., , 93854920 - 93954309), it does not map with coordinates as in UCSC. Is there any work around? My goal is simple but it turns out to be more complicated than I expected :(
Any leads would be much appreciated.