Entering edit mode
2.3 years ago
kofuji
▴
10
Hello, everyone. I'm wondering how STAR handles with multimapped reads when using paired ends mode.
If one side of reads is a multimapper with the same score and the other is unique, how does STAR act?
I want to distinguish multimappers which have unique pair from multimappers whose pair is also multimapper.
Can STAR reflect mate pair status to FLAG, score, or any other information?
Thank you,
