Difference between "--solostrand" and "--readstrand" commands in STARsolo
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2.3 years ago
Aaron ▴ 30

Would someone be able to explain the difference between the "--solostrand" and "--readstrand" commands in STARsolo? What would it look like if I set each "Unstranded" vs e.g. "Forward"? I'm reading documentation for it (https://physiology.med.cornell.edu/faculty/skrabanek/lab/angsd/lecture_notes/STARmanual.pdf) but I'm not exactly clear about it. (This is my first time analyzing RNA-seq data though.)

STARsolo • 584 views
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