Modern processing of VCF files in Python
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Entering edit mode
13 months ago
tiagoantao ▴ 690

Hi All,

I currently use PyVCF to process VCF files in Python. But PyVCF is a old project that doesn't get updated frequently. Question: Is there a more modern way to processing VCF files in Python? What are people using these days?

Thanks!

python vcf • 998 views
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Entering edit mode
13 months ago

Perhaps this ? https://github.com/brentp/cyvcf2

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13 months ago
liorglic ★ 1.1k

There is hail, which is a more general framework for genomic data analysis, that can also handle VCF files.

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