Unable to download kraken2 database
0
0
Entering edit mode
2.3 years ago

Hello, I have tried to download the database but still I got the error

Please help me to solve this issue

Command

(base) [suresh@node4 bin]$ ./kraken2-build --standard --db /Analysis/mathavan/kraken_db

Error Message:

Downloading nucleotide wgs accession to taxon map... done.
Downloaded accession to taxon map(s)
Downloading taxonomy tree data... done.
Uncompressing taxonomy data... done.
Untarring taxonomy tree data... done.
Step 1/2: Performing rsync file transfer of requested files
Rsync file transfer complete.
Step 2/2: Assigning taxonomic IDs to sequences
Processed 429 projects (730 sequences, 1.17 Gbp)... done.
All files processed, cleaning up extra sequence files... done, library complete.
Masking low-complexity regions of downloaded library... done.
Step 1/2: Performing rsync file transfer of requested files
Rsync file transfer complete.
Step 2/2: Assigning taxonomic IDs to sequences
Processed 28494 projects (67157 sequences, 118.46 Gbp)... done.
All files processed, cleaning up extra sequence files... done, library complete.
Masking low-complexity regions of downloaded library... done.
Step 1/2: Performing rsync file transfer of requested files
Rsync file transfer complete.
Step 2/2: Assigning taxonomic IDs to sequences
Processed 11807 projects (14718 sequences, 463.50 Mbp)... done.
All files processed, cleaning up extra sequence files... done, library complete.
Masking low-complexity regions of downloaded library... done.
Downloading plasmid files from FTP...gzip: abort: corrupted input -- invalid deflate data: plasmid.11.1.genomic.fna.gz
gzip: abort: corrupted input -- invalid deflate data: plasmid.3.1.genomic.fna.gz
gzip: abort: corrupted input -- invalid deflate data: plasmid.5.1.genomic.fna.gz
gzip: abort: corrupted input -- invalid deflate data: plasmid.9.1.genomic.fna.gz
databaase kraken2 metagenome • 935 views
ADD COMMENT
0
Entering edit mode

seems downloaded files are corrupted. Try when connection is stable.

ADD REPLY

Login before adding your answer.

Traffic: 1769 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6