How can I find reads that have multi-mapped with multiple genes overlapping in the same region
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4 months ago
Berk • 0

Sometimes there is more than one gene in the same region, for example paralog genes. I want to find the reads that are multi-mapped in the same region. I have a genome aligned BAM file as input and score the reads to the genes with pysam.

Rna-Seq multi mapped read • 235 views
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