Hello everyone, I was wondering if anyone has used ProkSeq pipeline for bacterial RNA-seq analysis? If so, could you please help me download and setup the analysis pipeline for MacOS? Thanks
Hello everyone, I was wondering if anyone has used ProkSeq pipeline for bacterial RNA-seq analysis? If so, could you please help me download and setup the analysis pipeline for MacOS? Thanks
If you are referring to this pipeline then your best bet is to use conda
for the install. Use first part of this tutorial to install conda
: Creating workflows with snakemake and conda then follow the directions linked for ProkSeq.
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Were you able to complete a run of the whole ProkSeq pipeline? I have never been able to get past the DEseq2 step.