hi everyone i'm new in this, and i've a problem. i was running a blastp with the next commad line:
./blastp -query longest.pep -db uniprop.pep -num_threads 4 -max_target_seqs 1 - evalue 1e-5 -outfmt 6 -out blastpc.latifolia.cvs
it running about 10 hours and stopped, my query have about 280 thousand amin sequences (longest ORFs) from a De novo trancriptome and my db have more half million proteins, and the outfile have only about 55 thousand matches
why don´t do all matches and why stopped at 50 thuosand?
i'm using a Lenovo desktop.