Metaphlan2
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4 months ago

Hi everyone,

I recently installed metaphlan2 on ubuntu OS. During installation, no errors were reported. But when I run the analysis, the following line is shown:

Traceback (most recent call last): File "/usr/share/metaphlan2/metaphlan2.py", line 67, in <module> import biom File "/home/axv183/.local/lib/python3.8/site-packages/biom/__init__.py", line 51, in <module> from .table import Table File "/home/axv183/.local/lib/python3.8/site-packages/biom/table.py", line 200, in <module> from ._filter import _filter File "biom/_filter.pyx", line 1, in init biom._filter ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject

Do anybody know what this means and how I can resolve it?

Many thanks in advance.

ubuntu metaphlan2 biobakery_workflows • 256 views
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Current version is metaphlan3. Please use it instead of earlier version.

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Yes thank you, tried MetaPhlAn3 and works fine.

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