Hello, I'm using a Virtual box version 6.1 with Ubuntu 21.04.
I'm trying to compute an ab initio gene prediction with the largest contig of Drosophila buzzatii. My contig is in fasta format and my search engine is RMBlast. When I try to perform the analysis I get back the following error:
FATAL ERROR: RepeatMasker giving up. One or more
batches failed! Unfortunately this type of error
cannot be recovered from. Please submit the following
details to the feedback page at the repeatmasker
website: http://www.repeatmasker.org
RepeatMasker Version: 4.1.2-p1
Library Version:
Search Engine: ncbi [ 2.12.0+ ]
Command Line: /home/osboxes/anaconda3/envs/annotation/bin/RepeatMasker-pa 3 -e rmblast -lib /home/osboxes/Documents/NGS_assembly_Sonia/Assembly_Assignment/assembly_annotation/configurationFiles/fly_repeats/specieslib -dir /home/osboxes/Documents/NGS_assembly_Sonia/Assembly_Assignment/assembly_annotation/316/316_annotation/RepeatMasker -norna -cutoff 250 -xsmall -gff /home/osboxes/Documents/NGS_assembly_Sonia/Assembly_Assignment/assembly_annotation/316/316.fasta
Batch Number: 1
Disk Space:
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/sda4 277708868 14725668 248806688 6% /home
System Memory:
MemTotal: 5465104 kB
MemFree: 2508952 kB
MemAvailable: 3768496 kB
Cached: 1403368 kB
SwapCached: 0 kB
SwapTotal: 8787964 kB
SwapFree: 8787964 kB
The detailed error within the new directory is the following:
Warning: Number of threads was reduced to 1 to match the number of available CPUs
Aborted (core dumped)
Can someone tell me the possible error here? Thank you!