Hi there, I use vg tools for giraffe mapping.
I started vg tools 2022.01.13 and now(2022.01.17).
vg makes log files : chunked fasta, chunked vcf file, etc...
I has checked log files. log files are not updated. So i check linux top command result to check vg consumption of CPU and memory.
vg consumes CPU but don't consume memory. i thought vg was running.
But run time is long~. So currently i guesses that vg run is fake.
How I do check vg run information?
My vg tools command is below.
vg autoindex --workflow giraffe --prefix ./hg38_based_variation_graph/hg38_pangenome -r ./fasta/resources_broad_hg38_v0_Homo_sapiens_assembly38.fasta -v ./vcf/test.vcf.gz -T ./hg38_based_variation_graph/ --threads 2 --target-mem 35G --verbosity 1