rmapper-ls from the SHRiMP mapping package
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3 months ago
17318598206 ▴ 10

If I have a fastq file for paired end sequencing, how do I convert Fastq to Fasta in order to be able to compare with SHRiMP? thank you

mapping SHRiMP • 238 views
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3 months ago
colindaven ★ 3.8k
seqtk seq -A in.fq > out.fa
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if i have two fastq files, could i write it as : seqtk seq -A r1.fq r2.fq>out.fa?

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