Question

rmapper-ls from the SHRiMP mapping package

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2.3 years ago

17318598206 ▴ 20

If I have a fastq file for paired end sequencing, how do I convert Fastq to Fasta in order to be able to compare with SHRiMP? thank you

mapping SHRiMP • 611 views

ADD COMMENT • link 2.3 years ago by 17318598206 ▴ 20

score 0 · Answer 1 · 2022-01-18

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2.3 years ago

colindaven 6.4k

seqtk seq -A in.fq > out.fa

ADD COMMENT • link 2.3 years ago by colindaven 6.4k

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if i have two fastq files, could i write it as : seqtk seq -A r1.fq r2.fq>out.fa?

ADD REPLY • link 2.3 years ago by 17318598206 ▴ 20