Is multi-threading possible for the GATK GermlineCNVCaller and PostprocessGermlineCNVCalls tools?
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4 months ago
Frieda ▴ 60

Is it possible to specify the number of threads for GATK GermlineCNVCaller and PostprocessGermlineCNVCalls?

After checking several websites, I understood that apparently some of the GATK tools have a Spark version that allows multi-threading, but neither GermlineCNVCaller nor PostprocessGermlineCNVCalls have the Spark version.

I also tried specifying --native-pair-hmm-threads, but apparently this flag is not valid for these two tools.

PostprocessGermlineCNVCalls multi-threading GermlineCNVCaller GATK • 193 views
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