Is it possible to specify the number of threads for GATK GermlineCNVCaller and PostprocessGermlineCNVCalls?
After checking several websites, I understood that apparently some of the GATK tools have a Spark version that allows multi-threading, but neither
PostprocessGermlineCNVCalls have the Spark version.
I also tried specifying
--native-pair-hmm-threads, but apparently this flag is not valid for these two tools.