VG Giraffe does not map reads < 39 bases
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4 months ago
jdru • 0

Hello,

My colleagues and I have noticed that vg giraffe will not map reads of length 38 or shorter. I assume this was an intentional design decision but I was hoping to verify that this is indeed the case? And if so would there be any simple way to override this behavior?

If this is not known behavior I would be glad to post an example where we observe this.

Thank you, Joshua

vg mapping graph variation giraffe • 102 views