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2.2 years ago
Informatic
•
0
Hello everyone
I have time series data without replicates for single group study, But data has batch effect as ~ time + patientID
. By default , make.design.matrix in masigPro looks for replicate in column 2. How can create accurate design_matrix for my data in order to include in the maSigPro method to run normalized count data coming from NGS data ?
My data looks like :
Time Batch Group
A1 1 1 1
B1 2 1 1
C1 1 2 1
D1 2 2 1
E1 1 3 1
F1 2 3 1
I will appreciate all the suggestion.