transcript id for gene id in ballgown
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4 months ago
iamsmor • 0

hi everyone ı am will do some visualization in R And ı done differantial expression analysis and get some csv but this csv table contain trancrip id without gene id. for visualiation ı have to know which trancript for which gene so ı can get trancrip id for gene id. there is ballgown::transcriptNames(bg)[] trancriptid but ı dont know already trancript ıd for DPM1 genes (ENS00000000149) tnank you for and kind of help.

R ballgown DE GENEID TRANSCRIPTID • 200 views
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Your question is unclear. Are you saying that you have the transcript ids but don't know which gene ids are associated with these transcript ids? If so, and if your transcript ids and gene ids from Ensembl then Biomart will be a good option for getting a table of transcript ids and their corresponding gene ids.

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