Entering edit mode
2.2 years ago
dzisis1986
▴
70
I have a count matrix like this :
Gene 1_T1 2_T1 3_T1 1_T2 2_T2 3_T2
ENSG00000223972 69.88 404.93 6757 898.9 6434 664.59
ENSG00000227232 75.72 0 567 685 0 629.94
ENSG00000133226 43 56 532 357.9 0 493.3
ENSG00000187010 834 666 65 0 54,67 323
ENSG00000224129 0 234.9 3234 655 345 312
ENSG00000236810 554 42 4 5 43 98
ENSG00000179163 77 4322 251 565 212 7
ENSG00000232557 88 34 12 2 22 9888
ENSG00000238084 978 0 233 32 123 7789
for 700 samples in two conditions T1 and T2 ( 350 T1 and 350 T2) for a list of 10000 genes. Could you please tell me how i will create a pca plot with two color vectors for T1 and T2 without using Deseq2. I want to check the pca from count reads .